Tuesday, July 24, 2012

Linux | Awk simple examples

1 comment  

-bash-4.0$ head -n 4 gene_Start_End.gff
chr1    AADACL3 12776344        12788726        +
chr1    AADACL4 12704566        12727097        +
chr1    ABCA4   94458793        94586705        -
chr1    ABCB10  229653926       229694442       -

-bash-4.0$ cat gene_Start_End.gff | awk '{print $1"\t"$3"\t"$4"\t"$2"\t"$5;}' | head -n 4
chr1    12776344        12788726        AADACL3 +
chr1    12704566        12727097        AADACL4 +
chr1    94458793        94586705        ABCA4   -
chr1    229653926       229694442       ABCB10  -

-bash-4.0$

1 comment:

  1. Marcelo GomesJuly 31, 2012 at 7:25 AM

    Se fizer

    head -n 4 | awk '{print $1"\t"$3"\t"$4"\t"$2"\t"$5;}'

    vai ter o mesmo resultado, só que com um custo menor!!!

    ReplyDelete